METASOURCES = AUTO
INCLUDES = -I$(top_srcdir)/src -I$(top_srcdir)/src/utils/ -I$(top_srcdir)/src/score/

AM_CXXFLAGS = $(BOOST_CPPFLAGS)
AM_LDFLAGS=$(BOOST_LDFLAGS)  $(BOOST_PROGRAM_OPTIONS_LIB) $(BOOST_REGEX_LIB) $(BOOST_SERIALIZATION_LIB) $(PROTOBUF_LIBS)

noinst_HEADERS = 

bin_PROGRAMS = scoreallpeptides

scoreallpeptides_SOURCES = scoreallpeptides.cpp
scoreallpeptides_LDADD = \
	$(top_builddir)/src/msmscoring/libcaptainbol-msmsscoring.la $(top_builddir)/src/utils/libcaptainbol-utils.la \
	$(top_builddir)/src/score/libcaptainbol-score.a \
	$(BOOST_LDFLAGS) $(BOOST_PROGRAM_OPTIONS_LIB) $(BOOST_REGEX_LIB) \
	$(BOOST_SERIALIZATION_LIB) $(PROTOBUF_LIBS)
